Fig. 1. Overall workflow. The variants detected based on the realignment to human genome 19 (hg19) were compared to the variants detected based on the realignment to Genome Reference Consortium human 38 (GRCh38). The converted variants from hg19 to GRCh38 using liftover tools were compared to those detected based on the realignment to GRCh38. Abbreviations: BAM, binary alignment map; VCF, variant call format; BED, browser extensible data.
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